WebMar 9, 2024 · The recommended approach for running Trinity on NeSI is to split the run into two separate job submissions. The first submission will run Trinity Phase 1 (read clustering) and the second submission will run Trinity Phase 2 (assembling read clusters). We have observed faster run times and reduced core hour usage when applying this approach to ... WebThe output file Trinity.fasta is the final Trinity output that contains the assembled transcripts. The Inchworm (step 2) and Chrysalis (step 3) steps can be memory …
Error in Trinity - Chrysalis: ReadsToTranscripts - SEQanswers
WebTrinity --seqType fq --left reads_1.fq --right reads_2.fq --CPU 6 --max_memory 20G ... Trinity will only use PE reads as extra information for bundling reads during the Chrysalis stage (unless something has changed in the newer versions that I am not aware of). ... Trinity --left left_1.fq,left_2.fq,left_3.fq --right right_1.fq,right_2.fq,right ... WebMay 30, 2024 · Statistics: Trinity Version: v2.2.0 Compiler: GCC Trinity Parameters: --seqType fq --max_memory 63G --left RNA_1.unmap1.fq.gz --right RNA_1.unmap2.fq.gz … chinese restaurants in schererville in
Trinity Performance Metrics
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